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1

Which One Among Aspartyl Protease, Metallopeptidase, and Artificial Metallopeptidase is the Most Efficient Catalyst in Peptide Hydrolysis?

Bora, Ram Prasad, Barman, Arghya, Zhu, Xiaoxia, Ozbil, Mehmet, Prabhakar, Rajeev

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 1.19 MB

english, 2010

2

Theoretical Insights into the Functioning of Metallopeptidases and Their Synthetic Analogues

Zhang, Tingting, Ozbil, Mehmet, Barman, Arghya, Paul, Thomas J., Bora, Ram Prasad, Prabhakar, Rajeev

Journal:

Accounts of Chemical Research

Year:

2015

Language:

english

File:

PDF, 3.44 MB

english, 2015

3

Insights into the mechanism of methionine oxidation catalyzed by metal (Cu2+, Zn2+, and Fe3+)—Amyloid beta (Aβ) peptide complexes: A computational study

Arghya Barman, Woody Taves, Rajeev Prabhakar

Journal:

Journal of Computational Chemistry

Year:

2009

Language:

english

File:

PDF, 556 KB

english, 2009

4

Mechanism of peptide hydrolysis by co-catalytic metal centers containing leucine aminopeptidase enzyme: a DFT approach

Xiaoxia Zhu, Arghya Barman, Mehmet Ozbil, Tingting Zhang, Shanghao Li, Rajeev Prabhakar

Journal:

JBIC Journal of Biological Inorganic Chemistry

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

5

The Possibility of Welfare Gains with Capital Inflows in a Small Tariff-Ridden Economy

Partha Sen, Arghya Ghosh, Abheek Barman

Journal:

Year:

1997

Language:

english

File:

PDF, 143 KB

english, 1997

6

Protonation States of the Catalytic Dyad of β-Secretase (BACE1) in the Presence of Chemically Diverse Inhibitors: A Molecular Docking Study

Barman, Arghya, Prabhakar, Rajeev

Journal:

Journal of Chemical Information and Modeling

Year:

2012

Language:

english

File:

PDF, 4.24 MB

english, 2012

7

Modeling the Self-Assembly Dynamics of Macromolecular Protein Aggregates Underlying Neurodegenerative Disorders

Zhao, Zhenyuan, Singh, Rajiv, Barman, Arghya, Johnson, Neil F., Prabhakar, Rajeev

Journal:

Journal of Computational and Theoretical Nanoscience

Year:

2009

Language:

english

File:

PDF, 11.53 MB

english, 2009

8

Elucidating the catalytic mechanism of β-secretase (BACE1): A quantum mechanics/molecular mechanics (QM/MM) approach

Barman, Arghya, Prabhakar, Rajeev

Journal:

Journal of Molecular Graphics and Modelling

Year:

2013

Language:

english

File:

PDF, 1.66 MB

english, 2013

9

Computational Modeling of Substrate Specificity and Catalysis of the β-Secretase (BACE1) Enzyme

Barman, Arghya, Schürer, Stephan, Prabhakar, Rajeev

Journal:

Year:

2011

Language:

english

File:

PDF, 5.19 MB

english, 2011

10

Computational Insights into Aspartyl Protease Activity of Presenilin 1 (PS1) Generating Alzheimer Amyloid β-Peptides (Aβ40 and Aβ42)

Singh, Rajiv, Barman, Arghya, Prabhakar, Rajeev

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 1.59 MB

english, 2009

11

Cotinine: A dual-action drug with multiple benefits against Alzheimer's disease

Echeverria, Valentina, Burgess, Sarah, Zeitlin, Ross, Barman, Arghya, Thakur, Garima, Inouye, Hideyo, Feris, Edmundo, Buckingham, Steven, Kirschner, Daniel, Mori, Takashi, Leblanc, Roger, Prabhakar, R

Journal:

Alzheimer's & Dementia

Year:

2010

Language:

english

File:

PDF, 75 KB

english, 2010

12

Cysteine-Mediated Dynamic Hydrogen-Bonding Network in the Active Site of Pin1

Barman, Arghya, Hamelberg, Donald

Journal:

Year:

2014

Language:

english

File:

PDF, 2.86 MB

english, 2014

13

Computational Insights into Dynamics of Protein Aggregation and Enzyme–Substrate Interactions

Ozbil, Mehmet, Barman, Arghya, Bora, Ram Prasad, Prabhakar, Rajeev

Journal:

The Journal of Physical Chemistry Letters

Year:

2012

Language:

english

File:

PDF, 1.45 MB

english, 2012

14

Hydrocarbons Depending on the Chain Length and Head Group Adopt Different Conformations within a Water-Soluble Nanocapsule: 1 H NMR and Molecular Dynamics Studies

Choudhury, Rajib, Barman, Arghya, Prabhakar, Rajeev, Ramamurthy, V.

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 1.71 MB

english, 2013

15

Dimerization of the Full-Length Alzheimer Amyloid β-Peptide (Aβ42) in Explicit Aqueous Solution: A Molecular Dynamics Study

Zhu, Xiaoxia, Bora, Ram Prasad, Barman, Arghya, Singh, Rajiv, Prabhakar, Rajeev

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 4.57 MB

english, 2012

16

Comparative molecular dynamics simulation studies for determining factors contributing to the thermostability of chemotaxis protein “CheY”

Paul, Manish, Hazra, Mousumi, Barman, Arghya, Hazra, Saugata

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2014

Language:

english

File:

PDF, 1.99 MB

english, 2014

17

Loss of intramolecular electrostatic interactions and limited conformational ensemble may promote self-association of cis -tau peptide

Barman, Arghya, Hamelberg, Donald

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

18

Computational perspective and evaluation of plausible catalytic mechanisms of peptidyl-prolyl cis–trans isomerases

Tork Ladani, Safieh, Souffrant, Michael G., Barman, Arghya, Hamelberg, Donald

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

19

Pushing the Limits of a Molecular Mechanics Force Field To Probe Weak CH···π Interactions in Proteins

Barman, Arghya, Batiste, Bruce, Hamelberg, Donald

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 3.85 MB

english, 2015

20

Computational Insights into Substrate and Site Specificities, Catalytic Mechanism, and Protonation States of the Catalytic Asp Dyad of β -Secretase

Barman, Arghya, Prabhakar, Rajeev

Journal:

Year:

2014

Language:

english

File:

PDF, 1.99 MB

english, 2014

21

An Iron Reservoir to the Catalytic Metal

Liu, Fange, Geng, Jiafeng, Gumpper, Ryan H., Barman, Arghya, Davis, Ian, Ozarowski, Andrew, Hamelberg, Donald, Liu, Aimin

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 3.15 MB

english, 2015

22

Conserved Hydration Sites in Pin1 Reveal a Distinctive Water Recognition Motif in Proteins

Barman, Arghya, Smitherman, Crystal Lynn, Souffrant, Michael Gregory, Gadda, Giovanni, Hamelberg, Donald

Journal:

Journal of Chemical Information and Modeling

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

23

Coupled Dynamics and Entropic Contribution to the Allosteric Mechanism of Pin1

Barman, Arghya, Hamelberg, Donald

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 1.12 MB

english, 2016

24

The Possibility of Welfare Gains with Capital Inflows in a Small Tariff-Ridden Economy

Partha Sen, Arghya Ghosh and Abheek Barman

Journal:

Year:

1997

Language:

english

File:

PDF, 300 KB

english, 1997

25

Mechanisms of peptide hydrolysis by aspartyl and metalloproteases

Paul, Thomas J., Barman, Arghya, Ozbil, Mehmet, Bora, Ram Prasad, Zhang, Tingting, Sharma, Gaurav, Hoffmann, Zachary, Prabhakar, Rajeev

Journal:

Physical Chemistry Chemical Physics

Year:

2016

Language:

english

File:

PDF, 2.90 MB

english, 2016

26

Fe(II)/Fe(III) Redox Process Can Significantly Modulate the Conformational Dynamics and Electrostatics of Pirin in NF-κB Regulation

Barman, Arghya, Hamelberg, Donald

Journal:

Year:

2016

Language:

english

File:

PDF, 3.60 MB

english, 2016

27

ChemInform Abstract: Mechanisms of Peptide Hydrolysis by Aspartyl and Metalloproteases

Paul, Thomas J., Barman, Arghya, Ozbil, Mehmet, Bora, Ram Prasad, Zhang, Tingting, Sharma, Gaurav, Hoffmann, Zachary, Prabhakar, Rajeev

Journal:

Year:

2016

File:

PDF, 14 KB

2016

28

High Prevalence and Endemicity of Multidrug Resistant Acinetobacter spp. in Intensive Care Unit of a Tertiary Care Hospital, Varanasi, India

Banerjee, Tuhina, Mishra, Anwita, Das, Arghya, Sharma, Swati, Barman, Hiranmay, Yadav, Ghanshyam

Journal:

Journal of Pathogens

Year:

2018

Language:

english

File:

PDF, 2.13 MB

english, 2018

29

Current status of MSSM Higgs sector with LHC 13 TeV data

Barman, Rahool Kumar, Bhattacherjee, Biplob, Choudhury, Arghya, Chowdhury, Debtosh, Lahiri, Jayita, Ray, Shamayita

Journal:

The European Physical Journal Plus

Year:

2019

Language:

english

File:

PDF, 3.29 MB

english, 2019

30

Scope of self-interacting thermal WIMPs in a minimal U(1)D extension and its future prospects

Barman, Rahool Kumar, Bhattacherjee, Biplob, Chatterjee, Arindam, Choudhury, Arghya, Gupta, Aritra

Journal:

Journal of High Energy Physics

Year:

2019

Language:

english

File:

PDF, 4.52 MB

english, 2019

31

Spatial variability of arsenic in Indo-Gangetic basin of Varanasi and its cancer risk assessment

Chattopadhyay, Arghya, Singh, Anand Prakash, Singh, Satish Kumar, Barman, Arijit, Patra, Abhik, Mondal, Bhabani Prasad, Banerjee, Koushik

Journal:

Year:

2019

Language:

english

File:

PDF, 1.19 MB

english, 2019

32

Second Generation G-Quadruplex Stabilizing Trimethine Cyanines

Owens, Eric A., Huynh, Hang T., Stroeva, Ekaterina, Barman, Arghya, Ziabrev, Kostiantyn, Paul, Ananya, Nguyen, Sarah V., Laramie, Matthew David, Hamelberg, Donald, Germann, Markus W., Wilson, W. David

Journal:

Bioconjugate Chemistry

Year:

2019

Language:

english

File:

PDF, 1.86 MB

english, 2019

33

Second Generation G-Quadruplex Stabilizing Trimethine Cyanines

Owens, Eric A., Huynh, Hang T., Stroeva, Ekaterina, Barman, Arghya, Ziabrev, Kostiantyn, Paul, Ananya, Nguyen, Sarah V., Laramie, Matthew David, Hamelberg, Donald, Germann, Markus W., Wilson, W. David

Journal:

Bioconjugate Chemistry

Year:

2019

File:

PDF, 1.86 MB

2019

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